PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00011671-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 276aa    MW: 30566.7 Da    PI: 9.9385
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00011671-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-13556147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                        +++WT+eE+e l+ +v+++G+g Wk I +        ++R+  ++k++w+++
  WALNUT_00011671-RA  5 KQKWTAEEEEALLAGVAKHGPGKWKNILKDPDfapflTHRSNIDLKDKWRNL 56
                        79************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.758161IPR017930Myb domain
SuperFamilySSF466891.58E-15258IPR009057Homeodomain-like
SMARTSM007175.8E-9459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-15556IPR009057Homeodomain-like
PfamPF002491.2E-9556IPR001005SANT/Myb domain
CDDcd116605.41E-22656No hitNo description
SMARTSM005261.7E-17112177IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.2E-13113184IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.502114182IPR005818Linker histone H1/H5, domain H15
PfamPF005385.7E-10116175IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF466891.58E-15116149IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGNQKQKWTA EEEEALLAGV AKHGPGKWKN ILKDPDFAPF LTHRSNIDLK DKWRNLSVST  60
SGQGSKDKSR AAKVKTTIAA PLPNVQNSSP AAPLRHNTDT VMDDPSNGTQ EGKNAPRYNA  120
MIFEALSAIE DKIGSDISAI VHFIERRHEV PQNFRRLLSS RLRRLVAQGK LEKVQNCYKI  180
RKETVLGTKT PSPKQRDVKP RQSLSSGLMT TSETVDDAAN AAAYRVADAE NKAYMAAEAV  240
KEAERISKVA EDTDSMLQLV KEIYERCSRG EIVPLA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890673.11e-147PREDICTED: telomere repeat-binding factor 4
SwissprotF4IEY42e-84TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBLA0A061GC921e-142A0A061GC92_THECC; Homeodomain-like/winged-helix DNA-binding family protein, putative
STRINGGLYMA07G00930.11e-118(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.14e-71MYB_related family protein